Index

B

batch_collect() (in module motila.motila)

batch_process_stacks() (in module motila.motila) binarize_2D_images() (in module motila.motila)

C

calc_process_time_logger() (in module motila.utils) calc_projection_range() (in module motila.motila)

check_folder_exist_create() (in module motila.utils) circular_median_filtering_on_projections() (in module motila.motila) compare_histograms() (in module motila.motila)

E

extract_and_register_subvolume() (in module motila.motila)

extract_subvolume() (in module motila.motila)

F

filterfiles_by_string() (in module motila.utils)

filterfolder_by_string() (in module motila.utils)

G

gaussian_blurr_filtering_on_projections() (in module motila.motila)

get_stack_dimensions() (in module motila.motila) getfile() (in module motila.utils)

H

hello_world() (in module motila.motila) hello_world_utils() (in module motila.utils) histogram_equalization() (in module motila.motila)

histogram_equalization_on_projections() (in module motila.motila) histogram_matching() (in module motila.motila) histogram_matching_on_projections() (in module motila.motila)

L

log() (motila.utils.logger_object method) logc() (motila.utils.logger_object method)

logger_object (class in motila.utils) logt() (motila.utils.logger_object method)

M

median_filtering_on_projections() (in module motila.motila) module motila.motila motila.utils

motila.motila module motila.utils module motility() (in module motila.motila)

P

plot_2D_image() (in module motila.motila) plot_2D_image_as_tif() (in module motila.motila) plot_histogram() (in module motila.motila) plot_histogram_of_projections() (in module motila.motila) plot_intensities() (in module motila.motila)

plot_pixel_areas() (in module motila.motila) plot_projected_stack() (in module motila.motila) plot_projected_stack_as_tif() (in module motila.motila) print_ram_usage() (in module motila.utils) print_ram_usage_in_loop() (in module motila.utils) process_stack() (in module motila.motila)

R

reg_2D_images() (in module motila.motila)

remove_small_blobs() (in module motila.motila)

S

single_slice_circular_median_filtering() (in module motila.motila) single_slice_gaussian_blurr_filtering() (in module motila.motila)

single_slice_median_filtering() (in module motila.motila) spectral_unmix() (in module motila.motila) stop() (motila.utils.logger_object method)

T

tiff_axes_check_and_correct() (in module motila.utils)

type() (motila.utils.logger_object method)

Z

z_max_project() (in module motila.motila)